Peptide deformylase inhibitors of Mycobacterium tuberculosis: synthesis, structural investigations, and biological results

Bioorg Med Chem Lett. 2008 Dec 15;18(24):6568-72. doi: 10.1016/j.bmcl.2008.10.040. Epub 2008 Oct 14.

Abstract

Bacterial peptide deformylase (PDF) belongs to a subfamily of metalloproteases catalyzing the removal of the N-terminal formyl group from newly synthesized proteins. We report the synthesis and biological activity of highly potent inhibitors of Mycobacterium tuberculosis (Mtb) PDF enzyme as well as the first X-ray crystal structure of Mtb PDF. Structure-activity relationship and crystallographic data clarified the structural requirements for high enzyme potency and cell based potency. Activities against single and multi-drug-resistant Mtb strains are also reported.

MeSH terms

  • Amidohydrolases / antagonists & inhibitors*
  • Amidohydrolases / chemistry*
  • Antitubercular Agents / chemistry
  • Antitubercular Agents / therapeutic use*
  • Chemistry, Pharmaceutical / methods
  • Crystallography, X-Ray / methods
  • Drug Design
  • Drug Resistance, Multiple
  • Fluoroquinolones / pharmacology
  • Gatifloxacin
  • Humans
  • Inhibitory Concentration 50
  • Microbial Sensitivity Tests
  • Models, Chemical
  • Molecular Conformation
  • Mycobacterium bovis / metabolism
  • Mycobacterium tuberculosis / drug effects*
  • Mycobacterium tuberculosis / metabolism
  • Tuberculosis / drug therapy*

Substances

  • Antitubercular Agents
  • Fluoroquinolones
  • Amidohydrolases
  • peptide deformylase
  • Gatifloxacin